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- librosa.sequence.viterbi_binary(prob, transition, p_state=None, p_init=None, return_logp=False)[source]
Viterbi decoding from binary (multi-label), discriminative state predictions.
Given a sequence of conditional state predictions
prob[s, t], indicating the conditional likelihood of state
sbeing active conditional on observation at time
t, and a 2*2 transition matrix
transitionwhich encodes the conditional probability of moving from state
s), the Viterbi algorithm computes the most likely sequence of states from the observations.
This function differs from
viterbi_discriminativein that it does not assume the states to be mutually exclusive.
viterbi_binaryis implemented by transforming the multi-label decoding problem to a collection of binary Viterbi problems (one for each state or label).
The output is a binary matrix
states[s, t]indicating whether each state
sis active at time
- probnp.ndarray [shape=(n_steps,) or (n_states, n_steps)], non-negative
prob[s, t]is the probability of state
sbeing active conditional on the observation at time
t. Must be non-negative and less than 1.
probis 1-dimensional, it is expanded to shape
- transitionnp.ndarray [shape=(2, 2) or (n_states, 2, 2)], non-negative
If 2-dimensional, the same transition matrix is applied to each sub-problem.
transition[0, i]is the probability of the state going from inactive to
transition[1, i]is the probability of the state going from active to
i. Each row must sum to 1.
transition[s]is interpreted as the 2x2 transition matrix for state label
- p_statenp.ndarray [shape=(n_states,)]
Optional: marginal probability for each state (between [0,1]). If not provided, a uniform distribution (0.5 for each state) is assumed.
- p_initnp.ndarray [shape=(n_states,)]
Optional: initial state distribution. If not provided, it is assumed to be uniform.
True, return the log-likelihood of the state sequence.
- statesnp.ndarray [shape=(n_states, n_steps)]
The most likely state sequence.
- logpnp.ndarray [shape=(n_states,)]
return_logp=True, the log probability of each state activation sequence
Viterbi decoding from observation likelihoods
Viterbi decoding for discriminative (mutually exclusive) state predictions
In this example, we have a sequence of binary state likelihoods that we want to de-noise under the assumption that state changes are relatively uncommon. Positive predictions should only be retained if they persist for multiple steps, and any transient predictions should be considered as errors. This use case arises frequently in problems such as instrument recognition, where state activations tend to be stable over time, but subject to abrupt changes (e.g., when an instrument joins the mix).
We assume that the 0 state has a self-transition probability of 90%, and the 1 state has a self-transition probability of 70%. We assume the marginal and initial probability of either state is 50%.
>>> trans = np.array([[0.9, 0.1], [0.3, 0.7]]) >>> prob = np.array([0.1, 0.7, 0.4, 0.3, 0.8, 0.9, 0.8, 0.2, 0.6, 0.3]) >>> librosa.sequence.viterbi_binary(prob, trans, p_state=0.5, p_init=0.5) array([[0, 0, 0, 0, 1, 1, 1, 0, 0, 0]])